PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00490.1_g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 182aa    MW: 19674.8 Da    PI: 4.7793
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00490.1_g00020.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.18.9e-181464255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                              y+GVr+++++ +Wv+eIr+p     r  +r++lg+f t+e+Aa a++ a+++l+g
  Rsa1.0_00490.1_g00020.1 14 LYRGVRQRRNSDKWVSEIREP-----RkpTRIWLGTFSTPEMAAIAYDVAALALKG 64
                             69******************9.....448************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.76E-281374No hitNo description
PfamPF008471.5E-111364IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-271473IPR001471AP2/ERF domain
PROSITE profilePS5103220.9561472IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-191474IPR016177DNA-binding domain
SMARTSM003801.3E-311478IPR001471AP2/ERF domain
PRINTSPR003672.1E-51526IPR001471AP2/ERF domain
PRINTSPR003672.1E-53854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MPGTSKENGG RHPLYRGVRQ RRNSDKWVSE IREPRKPTRI WLGTFSTPEM AAIAYDVAAL  60
ALKGTETEFN FPNSVSSLPV PASMSPGDIQ AAAASAAAAF GAARDAIVRT NNNNASSSSV  120
ERSNVNTSGY MDEDLIFDMP NVLMNMAEGM LLSPPRQSTF DAASDADGYT GGDDYLWNFQ  180
TK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069193e-94AC006919.6 Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence.
GenBankAY5608673e-94AY560867.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g36450) mRNA, complete cds.
GenBankCP0026853e-94CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ4466043e-94DQ446604.1 Arabidopsis thaliana clone pENTR221-At2g36450 AP2 domain-containing protein (At2g36450) mRNA, complete cds.
GenBankDQ6530453e-94DQ653045.1 Arabidopsis thaliana clone 0000012250_0000008884 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141595.11e-109PREDICTED: ethylene-responsive transcription factor ERF024-like
RefseqXP_013691481.11e-109PREDICTED: ethylene-responsive transcription factor ERF024
SwissprotQ9SJR05e-89ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A078JYM01e-109A0A078JYM0_BRANA; BnaAnng34830D protein
TrEMBLM4DL541e-109M4DL54_BRARP; Uncharacterized protein
STRINGBra017235.1-P1e-109(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.13e-79ERF family protein